Demultiplex reads using the cell_umi_gene.tsv file from Sockeye.
Usage
demultiplex_sockeye(fastq_dir, sockeye_tsv, out_fq)
Arguments
- fastq_dir
The folder containing FASTQ files from Sockeye's output under ingest/chunked_fastqs.
- sockeye_tsv
The cell_umi_gene.tsv file from Sockeye.
- out_fq
The output FASTQ file.
