This function plots a spatial point plot for given feature
Usage
plot_spatial_feature(
spe,
feature,
opacity = 50,
grayscale = TRUE,
size = 1,
assay_type = "counts",
color = "red",
...
)Arguments
- spe
The SpatialExperiment object.
- feature
The feature to plot. Could be either a feature name or index present in the assay or a numeric vector of length nrow(spe).
- opacity
The opacity of the background tissue image.
- grayscale
Whether to convert the background image to grayscale.
- size
The size of the points.
- assay_type
The assay that contains the given features. E.g. 'counts', 'logcounts'.
- color
The maximum color for the feature. Minimum color is transparent.
- ...
Additional arguments to pass to
geom_point.