This function plots a spatial pie chart for given features.
Usage
plot_spatial_pie(
spe,
features,
assay_type = "counts",
color_palette,
opacity = 50,
grayscale = TRUE,
pie_scale = 0.8
)Arguments
- spe
The SpatialExperiment object.
- features
The features to plot.
- assay_type
The assay that contains the given features.
- color_palette
Named vector of colors for each feature.
- opacity
The opacity of the background tissue image.
- grayscale
Whether to convert the background image to grayscale.
- pie_scale
The size of the pie charts.