Datasets

LongBench

Datasets

• GSE303762

Analysis Code

Publications

• Benchmarking long-read RNA-sequencing technologies with LongBench: a cross-platform reference dataset profiling cancer cell lines with bulk and single-cell approaches

LongMix

Datasets

• GSE172421

Analysis Code

Publications

• Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures

Long-read imprinted DNA methylation

Datasets

• ENA

Analysis Code

Publications

• Using long-read sequencing to detect imprinted DNA methylation

Long-read single-cell datasets

Datasets

• GSE154869
• GSE154870
• GSE142285
• GSE154868
• EGA

Analysis Code

Publications

• Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
• Single-cell multiomics reveal the scale of multilayered adaptations enabling CLL relapse during venetoclax therapy

RNA-mixology

Datasets

• GSE64098

Analysis Code

Publications

• RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods

sc-mixology

Datasets

• GSE118767

Analysis Code

Publications

• Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments
• Benchmarking UMI-based single-cell RNA-seq preprocessing workflows

SpatialBenchHighRes

Datasets

• S-BIAD3359 (Xenium and MERSCOPE datasets)
• S-BSST2361 (Visium HD dataset)
• E-MTAB-17245 (10X snRNA-seq dataset)

Analysis Code

Publications

• SpatialBench: Comparative cross-platform benchmarking of high-resolution spatial transcriptomics using matched mouse lymphoid tissue

SpatialBenchVisium

Datasets

• GSE254652

Analysis Code

Publications

• Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset